Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Associated code and data for "A network medicine approach for identifying diagnostic and prognostic biomarkers and exploring drug repurposing in human cancer (doi: 10.1016/j.csbj.2022.11.037)"

Xin Lai

February 2022

This deposit contains the latest data, code, and analysis to recreate the results in the manuscript ...

Analysis code for FASIL-MS

Májek, Peter (5300878)

May 2018

<p>A set of analysis scripts to relatively quantify all possible combinations of heavy-light acetyla...

Supporting data for “Molecular Basis of Human Complex Diseases”.

Ming Yue (9067538)

September 2022

This dataset contains all of the source code used in the analysis described in the paper "Molecular ...

Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Jain, Miten
Tyson, John R
Loose, Matthew
Ip, Camilla LC
Eccles, David A
O'Grady, Justin
Malla, Sunir
Leggett, Richard M
Wallerman, Ola
Jansen, Hans J
Zalunin, Vadim
Birney, Ewan
Brown, Bonnie L
Snutch, Terrance P
Olsen, Hugh E
The MinION Analysis and Reference Consortium

May 2017

Code used in the analysis of the publication titled "MinION Analysis and Reference Consortium: Phase...

Data analysis code

Hernandez, Catherine Amanda
Koskella, Britt

August 2019

Code for all data analysis in the manuscript (main text and supplement), split by figure number

Code and analysis output

Mitchell, Jonathan S.

July 2015

AnalysisCode is the R code used to run all analyses and generate all figures in the manuscript. Foss...

girke-lab/targetSelectivity: Large-scale Bioactivity Analysis of the Small-Molecule Assayed Proteome

Tyler W. H. Backman
Daniel S. Evans
Thomas Girke

December 2016

This code is a supplement to the following publication: Backman TW, Evans DS, Girke T. Large-scale ...

R Code for the Meta-analysis

Peng, Shijia
Kinlock, Nicole
Gurevitch, Jessica
Peng, Shao-Lin

January 2019

This is the R code that was used to analyze the data in the Data2MetaAnalysisDataBase fil

Code to reproduce analyses and figures

Xavier Hernandez Alias (13993371)

November 2022

This repository includes the code used to reproduce the results and plots of the manuscript "Single...

The source code used to obtain the numerical simulations reported in this manuscript.

Sayedeh Hussaini (11540005)
Sarah L. Lädke (17599283)
Johannes Schröder-Schetelig (17599286)
Vishalini Venkatesan (17599289)
Raúl A. Quiñonez Uribe (6012227)
Claudia Richter (4854403)
Rupamanjari Majumder (128411)
Stefan Luther (5922638)

December 2023

The source code used to obtain the numerical simulations reported in this manuscript.</p

Analysis source code for: Peneder et al. "Multimodal analysis of cell-free DNA whole genome sequencing for pediatric cancers with low mutational burden", Nature Communications (2021)

Peneder Peter

April 2021

This .zip file contains the source code necessary to replicate the key aspects of the analysis prese...

R Code for analyses in Kilgour et al. 2018

Kilgour, Julia
McAdam, Andrew
Betini, Gustavo
Norris, Ryan

February 2018

This document represents all code used for the statistical analyses in our study

Analysis code for: An optimization framework to identify key management strategies for improving biorefinery performance: A case study of winter barley production

Kar, S

This submission contains the analysis code and the necessary data files to replicate the study. The ...

Code to generate figures 3 and 4 of: "A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics."

Gabriels, Ralf
Van Puyvelde, Bart

November 2021

Code to generate figures 3 and 4 of the manuscript titled "A comprehensive LFQ benchmark dataset to ...

Code: Analyses across taxonomic groups

Bakewell, Adam Thomas
Davis, Katie E.
Isaac, Nick J. B.
Freckleton, Robert P.
Mayhew, Peter J.

January 9999

R code for analyses in the second section of the results, including: phylogenetic PCA across taxonom...

Associated code and data for "A network medicine approach for identifying diagnostic and prognostic biomarkers and exploring drug repurposing in human cancer (doi: 10.1016/j.csbj.2022.11.037)"

Xin Lai

February 2022

This deposit contains the latest data, code, and analysis to recreate the results in the manuscript ...

Analysis code for FASIL-MS

Májek, Peter (5300878)

May 2018

<p>A set of analysis scripts to relatively quantify all possible combinations of heavy-light acetyla...

Supporting data for “Molecular Basis of Human Complex Diseases”.

Ming Yue (9067538)

September 2022

This dataset contains all of the source code used in the analysis described in the paper "Molecular ...

Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Jain, Miten
Tyson, John R
Loose, Matthew
Ip, Camilla LC
Eccles, David A
O'Grady, Justin
Malla, Sunir
Leggett, Richard M
Wallerman, Ola
Jansen, Hans J
Zalunin, Vadim
Birney, Ewan
Brown, Bonnie L
Snutch, Terrance P
Olsen, Hugh E
The MinION Analysis and Reference Consortium

May 2017

Code used in the analysis of the publication titled "MinION Analysis and Reference Consortium: Phase...

Data analysis code

Hernandez, Catherine Amanda
Koskella, Britt

August 2019

Code for all data analysis in the manuscript (main text and supplement), split by figure number

Code and analysis output

Mitchell, Jonathan S.

July 2015

AnalysisCode is the R code used to run all analyses and generate all figures in the manuscript. Foss...

girke-lab/targetSelectivity: Large-scale Bioactivity Analysis of the Small-Molecule Assayed Proteome

Tyler W. H. Backman
Daniel S. Evans
Thomas Girke

December 2016

This code is a supplement to the following publication: Backman TW, Evans DS, Girke T. Large-scale ...

R Code for the Meta-analysis

Peng, Shijia
Kinlock, Nicole
Gurevitch, Jessica
Peng, Shao-Lin

January 2019

This is the R code that was used to analyze the data in the Data2MetaAnalysisDataBase fil

Code to reproduce analyses and figures

Xavier Hernandez Alias (13993371)

November 2022

This repository includes the code used to reproduce the results and plots of the manuscript "Single...

The source code used to obtain the numerical simulations reported in this manuscript.

Sayedeh Hussaini (11540005)
Sarah L. Lädke (17599283)
Johannes Schröder-Schetelig (17599286)
Vishalini Venkatesan (17599289)
Raúl A. Quiñonez Uribe (6012227)
Claudia Richter (4854403)
Rupamanjari Majumder (128411)
Stefan Luther (5922638)

December 2023

The source code used to obtain the numerical simulations reported in this manuscript.</p

Analysis source code for: Peneder et al. "Multimodal analysis of cell-free DNA whole genome sequencing for pediatric cancers with low mutational burden", Nature Communications (2021)

Peneder Peter

April 2021

This .zip file contains the source code necessary to replicate the key aspects of the analysis prese...

R Code for analyses in Kilgour et al. 2018

Kilgour, Julia
McAdam, Andrew
Betini, Gustavo
Norris, Ryan

February 2018

This document represents all code used for the statistical analyses in our study

Analysis code for: An optimization framework to identify key management strategies for improving biorefinery performance: A case study of winter barley production

Kar, S

This submission contains the analysis code and the necessary data files to replicate the study. The ...

Code to generate figures 3 and 4 of: "A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics."

Gabriels, Ralf
Van Puyvelde, Bart

November 2021

Code to generate figures 3 and 4 of the manuscript titled "A comprehensive LFQ benchmark dataset to ...

Code: Analyses across taxonomic groups

Bakewell, Adam Thomas
Davis, Katie E.
Isaac, Nick J. B.
Freckleton, Robert P.
Mayhew, Peter J.

January 9999

R code for analyses in the second section of the results, including: phylogenetic PCA across taxonom...

Associated code and data for "A network medicine approach for identifying diagnostic and prognostic biomarkers and exploring drug repurposing in human cancer (doi: 10.1016/j.csbj.2022.11.037)"

Xin Lai

February 2022

This deposit contains the latest data, code, and analysis to recreate the results in the manuscript ...

Analysis code for FASIL-MS

Májek, Peter (5300878)

May 2018

<p>A set of analysis scripts to relatively quantify all possible combinations of heavy-light acetyla...

Supporting data for “Molecular Basis of Human Complex Diseases”.

Ming Yue (9067538)

September 2022

This dataset contains all of the source code used in the analysis described in the paper "Molecular ...

Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Abstract

Extracted data

Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Abstract

Extracted data

Related items

Related items